Rue du Bugnon 9, CH-1005, Lausanne, VD, Switzerland
+41 21 692 51 06 (Prof. J-Y. Chatton, Coordinator)
Contact : supportcif@unil.ch

Bioimage Analysis Services at the Cellular Imaging Facility (CIF)

Empowering Your Research Through Advanced Image Analysis

At the CIF, we’re dedicated to helping researchers unlock the full potential of their imaging data. Our comprehensive bioimage analysis services are designed to support you at every stage of your research journey, from experiment design to final data interpretation.

1. Expert Consultation and Advisory

  • Personalized guidance on image analysis strategies
  • Comprehensive support for your entire bioimaging pipeline:
    • Experiment design
    • Image acquisition
    • Data analysis and interpretation

2. Training

We provide 1-on-1 trainings on the popular imaging solutions available at the CIF like:

  • QuPath > Large slide scanner images, when counting and classifying cells by thousands is a must
  • Imaris > For 3D datasets and extra-large multidimensional data
  • Fiji (ImageJ) > The everyday workhorse covering most of your imaging needs
  • CellProfiler > Large collections of images, time-lapses, tracking and objects relationships

2. Custom Tutorials and Guides

  • Tailored instructions for your specific research questions
  • Step-by-step guides to enhance your analysis skills

Youtube example of tutorial using Fiji

3. Advanced Workflow Design

We specialize in creating efficient workflows using all the applications you know

4. Automation through Scripting

  • Custom script development to streamline your analysis
  • Partial or full automation of repetitive tasks
  • Scripting in Fiji macro, QuPath or Python

5. Critical Feedback and Review

  • Expert evaluation of your images and scripts
  • Constructive suggestions to optimize your imaging strategies

6. Networking and Collaboration

  • Connections to other experts in specialized fields
  • Facilitating interdisciplinary collaborations

Our services are available to:

  • All CIF users (priority access)
  • The broader academic community

While we welcome projects from all researchers, CIF users will be given priority in our service queue.

  1. Expertise: Benefit from our years of experience in bioimage analysis
  2. Efficiency: Save time with optimized workflows and automation
  3. Quality: Ensure the highest standards in your imaging data analysis
  4. Innovation: Access cutting-edge techniques and software solutions
  5. Support: Receive ongoing assistance throughout your research project

Ready to Elevate Your Research?

Contact us today to discuss how we can support your imaging needs and take your research to the next level.

Email Yannick Krempp at yannick.krempp@unil.ch


“Transforming pixels into insights”